CNORfuzzy

DOI: 10.18129/B9.bioc.CNORfuzzy    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see CNORfuzzy.

Addon to CellNOptR: Fuzzy Logic

Bioconductor version: 3.13

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORfuzzy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")

 

PDF	R Script	Main vignette:Playing with networks using CNORfuzzyl
PDF		Reference Manual
Text		NEWS

Details

biocViews	Network, Software
Version	1.34.0
In Bioconductor since	BioC 2.11 (R-2.15) (9 years)
License	GPL-2
Depends	R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5)
Imports
LinkingTo
Suggests	xtable, Rgraphviz, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORfuzzy_1.34.0.tar.gz
Windows Binary	CNORfuzzy_1.34.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	CNORfuzzy_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORfuzzy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORfuzzy
Package Short Url	https://bioconductor.org/packages/CNORfuzzy/
Package Downloads Report	Download Stats