AnVILPublish

DOI: 10.18129/B9.bioc.AnVILPublish    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see AnVILPublish.

Publish Packages and Other Resources to AnVIL Workspaces

Bioconductor version: 3.13

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Author: Martin Morgan [aut, cre] , Vincent Carey [ctb]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILPublish")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILPublish")

 

HTML	R Script	Publishing R / Bioconductor packages to AnVIL Workspaces
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.2.0
In Bioconductor since	BioC 3.12 (R-4.0) (1 year)
License	Artistic-2.0
Depends
Imports	AnVIL, httr, jsonlite, rmarkdown, whisker, tools, utils, stats
LinkingTo
Suggests	knitr, BiocStyle, BiocManager
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILPublish_1.2.0.tar.gz
Windows Binary	AnVILPublish_1.2.0.zip
macOS 10.13 (High Sierra)	AnVILPublish_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnVILPublish
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILPublish
Package Short Url	https://bioconductor.org/packages/AnVILPublish/
Package Downloads Report	Download Stats