alignToRef {DIAlignR} | R Documentation |
df contains unaligned features for an analyte across multiple runs. This function aligns eXp run to ref run and updates corresponding features.
alignToRef( eXp, ref, refIdx, fileInfo, XICs, XICs.ref, params, df, globalFits, RSE )
eXp |
(string) name of the run to be aligned to reference run. Must be in the rownames of fileInfo. |
ref |
(string) name of the reference run. Must be in the rownames of fileInfo. |
fileInfo |
(data-frame) output of |
params |
(list) parameters are entered as list. Output of the |
df |
(dataframe) a collection of features related to analyte_chr. |
globalFits |
(list) each element is either of class lm or loess. This is an output of |
RSE |
(list) Each element represents Residual Standard Error of corresponding fit in globalFits. |
analyte_chr |
(string) Precursor ID of the requested analyte. |
XICs.ref.s |
(list of dataframes) Smoothed fragment-ion chromatograms of the analyte_chr from the reference run. |
invisible NULL
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2020) + GPL-3 Date: 2020-07-26
alignTargetedRuns, perBatch, setAlignmentRank, getMultipeptide
dataPath <- system.file("extdata", package = "DIAlignR")