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| abf1 | Data for a 18-array Affymetrix experiment |
| adjPval | Generate FDR adjusted P values for F test result. |
| arrayview | View the layout of input data |
| consensus | Build consensus tree out of bootstrap cluster result |
| dyeswapfilter | Gene filter for dye-swap experiment |
| fill.missing | Fill in missing data |
| fitmaanova | Fit ANOVA model for Micro Array experiment |
| fom | Figure of Merit |
| geneprofile | Expression plot for selected genes |
| gridcheck | Plot grid-by-grid data comparison for arrays |
| kidney | Kidney Data from CAMDA |
| kidney.raw | Kidney Data from CAMDA |
| macluster | Clustering analysis for Microarray experiment |
| matest | Statistical test for Microarray experiment |
| PairContrast | Pairwise comparison matrix |
| read.madata | Read Microarray data |
| resiplot | Residual plot for Microarray Experiment |
| riplot | Ratio intensity plot for 2-dye Microarray experiment |
| Rmaanova.version | Display the current version of the package |
| subset.madata | Subsetting Microarray data objects |
| summarytable | Summarize the matest result. |
| transform.madata | Micro Array experiment data transformation |
| varplot | Variance component plot |
| volcano | Volcano plot for F test results |
| write.madata | Write Micro Array data to a TAB delimited simple text file |