Maximum Likelihood Decay Modeling of RNA Degradation Data

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Documentation for package ‘RNAdecay’ version 1.12.0

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a_high calculates bounds for modeled parameters
a_low calculates bounds for modeled parameters
b_low calculates bounds for modeled parameters
cols Indexes column names of a data.frame matching multiple patterns (i.e., multigrep)
const_decay exponential decay functions
decaying_decay exponential decay functions
decay_data Normalized RNA abundance RNA decay timecourse
decay_plot decay_plot() function
groupings Combinatorial groups matrix generator
group_map model color map
hl_plot hl_plot() function
models Example double exponential decay modeling results
mod_optimization model optimization for fitting exponential decay models to normalized data
plain_theme a custom ggplot2 theme
results Example double exponential decay modeling results
RPMs RNA abundance reads per million over RNA decay timecourse