DOI: 10.18129/B9.bioc.msdata    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: 3.12

Ion Trap positive ionization mode data in mzData file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzData, mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at>, Laurent Gatto <laurent.gatto at> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at>, Laurent Gatto <laurent.gatto at>

Citation (from within R, enter citation("msdata")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews ExperimentData, MassSpectrometryData
Version 0.30.0
License GPL (>= 2)
Depends R (>= 2.10)
Suggests xcms, mzR, MSnbase
Depends On Me
Imports Me
Suggests Me IPO, MSnbase, mzR, peakPantheR, QFeatures, RforProteomics, Spectra, xcms
Links To Me
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Source Package msdata_0.30.0.tar.gz
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