DuoClustering2018

DOI: 10.18129/B9.bioc.DuoClustering2018    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DuoClustering2018.

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Bioconductor version: 3.12

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

Author: Angelo Duò, Charlotte Soneson

Maintainer: Angelo Duò <angelo.duo at icloud.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DuoClustering2018")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DuoClustering2018")

 

HTML	R Script	Apply clustering method
HTML	R Script	Plot performance summaries
HTML	R Script	Visualize data sets and clustering results with iSEE
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, SingleCellData
Version	1.8.0
License	GPL (>=2)
Depends
Imports	ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	corral, scry
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DuoClustering2018_1.8.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/DuoClustering2018
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DuoClustering2018
Package Short Url	https://bioconductor.org/packages/DuoClustering2018/
Package Downloads Report	Download Stats