DAPARdata

DOI: 10.18129/B9.bioc.DAPARdata    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DAPARdata.

Data accompanying the DAPAR and Prostar packages

Bioconductor version: 3.12

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Author: Samuel Wieczorek and Florence Combes

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DAPARdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPARdata")

 

PDF		Exp1_R25_pept.pdf
PDF		Exp1_R25_prot.pdf
PDF		Exp1_R2_pept.pdf
PDF		Exp1_R2_prot.pdf
PDF		Exp2_R100_pept.pdf
PDF		Exp2_R100_prot.pdf
PDF		Exp2_R10_pept.pdf
PDF		Exp2_R10_prot.pdf
PDF		Exp2_R2_pept.pdf
PDF		Exp2_R2_prot.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, MassSpectrometryData
Version	1.20.1
License	GPL-2
Depends	R (>= 4.0.3)
Imports	utils, knitr, MSnbase
LinkingTo
Suggests	DAPAR, Prostar
SystemRequirements
Enhances
URL	http://www.prostar-proteomics.org/
BugReports	https://github.com/samWieczorek/DAPARdata/issues
Depends On Me
Imports Me	DAPAR, Prostar
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DAPARdata_1.20.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/DAPARdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DAPARdata
Package Short Url	https://bioconductor.org/packages/DAPARdata/
Package Downloads Report	Download Stats