DOI: 10.18129/B9.bioc.DAPARdata    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DAPARdata.

Data accompanying the DAPAR and Prostar packages

Bioconductor version: 3.12

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Author: Samuel Wieczorek and Florence Combes

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPARdata")):


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PDF Exp1_R25_pept.pdf
PDF Exp1_R25_prot.pdf
PDF Exp1_R2_pept.pdf
PDF Exp1_R2_prot.pdf
PDF Exp2_R100_pept.pdf
PDF Exp2_R100_prot.pdf
PDF Exp2_R10_pept.pdf
PDF Exp2_R10_prot.pdf
PDF Exp2_R2_pept.pdf
PDF Exp2_R2_prot.pdf
PDF   Reference Manual
Text   NEWS


biocViews ExperimentData, MassSpectrometryData
Version 1.20.1
License GPL-2
Depends R (>= 4.0.3)
Imports utils, knitr, MSnbase
Suggests DAPAR, Prostar
URL http://www.prostar-proteomics.org/
BugReports https://github.com/samWieczorek/DAPARdata/issues
Depends On Me
Imports Me DAPAR, Prostar
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package DAPARdata_1.20.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/DAPARdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPARdata
Package Short Url https://bioconductor.org/packages/DAPARdata/
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