Retrieve list of pathway names containing the query Xref by identifier and system code.

findPathwayNamesByXref(identifier, systemCode)

Arguments

identifier

(character) The official ID specified by a data source or system

systemCode

(character) The BridgeDb code associated with the data source or system, e.g., En (Ensembl), L (Entrez), Ch (HMDB), etc. See column two of https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.bio/src/main/resources/org/bridgedb/bio/datasources.tsv.

Value

A list of lists

Details

Note: there will be multiple listings of the same pathway if the Xref is present mutiple times.

Examples

{ findPathwayNamesByXref('ENSG00000232810','En') }
#> [1] "Mammary gland development pathway - Embryonic development (Stage 1 of 4)" #> [2] "miRNAs involvement in the immune response in sepsis" #> [3] "miRNAs involvement in the immune response in sepsis" #> [4] "Nuclear Receptors Meta-Pathway" #> [5] "Interleukin-4 and Interleukin-13 signaling" #> [6] "Interleukin-4 and Interleukin-13 signaling" #> [7] "Protein alkylation leading to liver fibrosis" #> [8] "Protein alkylation leading to liver fibrosis" #> [9] "Interleukin-10 signaling" #> [10] "Transcription factor regulation in adipogenesis" #> [11] "Aryl Hydrocarbon Receptor Pathway" #> [12] "Development and heterogeneity of the ILC family" #> [13] "Development and heterogeneity of the ILC family" #> [14] "EBV LMP1 signaling" #> [15] "Fibrin Complement Receptor 3 Signaling Pathway" #> [16] "Novel intracellular components of RIG-I-like receptor (RLR) pathway" #> [17] "Oxidative Damage" #> [18] "Lung fibrosis" #> [19] "Spinal Cord Injury" #> [20] "Spinal Cord Injury" #> [21] "Spinal Cord Injury" #> [22] "Spinal Cord Injury" #> [23] "T-Cell antigen Receptor (TCR) pathway during Staphylococcus aureus infection" #> [24] "Genes involved in male infertility" #> [25] "Overview of nanoparticle effects" #> [26] "NO/cGMP/PKG mediated Neuroprotection" #> [27] "Non-genomic actions of 1,25 dihydroxyvitamin D3" #> [28] "Hepatitis B infection" #> [29] "Hepatitis B infection" #> [30] "Alzheimers Disease" #> [31] "Polycystic Kidney Disease Pathway" #> [32] "Type II diabetes mellitus" #> [33] "Viral Acute Myocarditis" #> [34] "Resistin as a regulator of inflammation" #> [35] "Cytokines and Inflammatory Response" #> [36] "Cytokines and Inflammatory Response" #> [37] "Cytokines and Inflammatory Response" #> [38] "Cytokines and Inflammatory Response" #> [39] "Cytokines and Inflammatory Response" #> [40] "Cytokines and Inflammatory Response" #> [41] "Cytokines and Inflammatory Response" #> [42] "TNF signaling" #> [43] "TNF signaling" #> [44] "TNF signaling" #> [45] "TNF signaling" #> [46] "TNF signaling" #> [47] "TNF signaling" #> [48] "TNF signaling" #> [49] "TNF signaling" #> [50] "TNF signaling" #> [51] "TNF signaling" #> [52] "TNF signaling" #> [53] "TNF signaling" #> [54] "TNF signaling" #> [55] "TNF signaling" #> [56] "TNF signaling" #> [57] "TNF signaling" #> [58] "TNF signaling" #> [59] "TNF signaling" #> [60] "TNF signaling" #> [61] "TNF signaling" #> [62] "TNF signaling" #> [63] "TNF signaling" #> [64] "TNF signaling" #> [65] "TNF signaling" #> [66] "TNF signaling" #> [67] "TNF signaling" #> [68] "TNF signaling" #> [69] "TNF signaling" #> [70] "TNF signaling" #> [71] "TNF signaling" #> [72] "TNF signaling" #> [73] "TNF signaling" #> [74] "TNF signaling" #> [75] "TNF signaling" #> [76] "TNF signaling" #> [77] "TNF signaling" #> [78] "TNF signaling" #> [79] "TNF signaling" #> [80] "TNF signaling" #> [81] "Transcriptional regulation of white adipocyte differentiation" #> [82] "Nonalcoholic fatty liver disease" #> [83] "Nonalcoholic fatty liver disease" #> [84] "Nonalcoholic fatty liver disease" #> [85] "Interleukin-4 and Interleukin-13 signaling" #> [86] "Interleukin-4 and Interleukin-13 signaling" #> [87] "Protein alkylation leading to liver fibrosis" #> [88] "TNFR2 non-canonical NF-kB pathway" #> [89] "TNFR2 non-canonical NF-kB pathway" #> [90] "TNFR2 non-canonical NF-kB pathway" #> [91] "TNFR2 non-canonical NF-kB pathway" #> [92] "TNFR2 non-canonical NF-kB pathway" #> [93] "TNFR2 non-canonical NF-kB pathway" #> [94] "TNFR2 non-canonical NF-kB pathway" #> [95] "TNFR2 non-canonical NF-kB pathway" #> [96] "Signal transduction through IL1R" #> [97] "Photodynamic therapy-induced AP-1 survival signaling." #> [98] "Photodynamic therapy-induced AP-1 survival signaling." #> [99] "Photodynamic therapy-induced AP-1 survival signaling." #> [100] "Cells and Molecules involved in local acute inflammatory response " #> [101] "Interleukin-10 signaling" #> [102] "LTF danger signal response pathway" #> [103] "TNF alpha Signaling Pathway" #> [104] "TNF alpha Signaling Pathway" #> [105] "TNF alpha Signaling Pathway" #> [106] "TNF alpha Signaling Pathway" #> [107] "TNF alpha Signaling Pathway" #> [108] "TNF alpha Signaling Pathway" #> [109] "TLR4 Signaling and Tolerance" #> [110] "TNF related weak inducer of apoptosis (TWEAK) Signaling Pathway" #> [111] "TNF related weak inducer of apoptosis (TWEAK) Signaling Pathway" #> [112] "TNF related weak inducer of apoptosis (TWEAK) Signaling Pathway" #> [113] "Toll-like Receptor Signaling Pathway" #> [114] "Adipogenesis" #> [115] "Apoptosis" #> [116] "Fas Ligand (FasL) pathway and Stress induction of Heat Shock Proteins (HSP) regulation" #> [117] "TGF-beta Receptor Signaling" #> [118] "TGF-beta Receptor Signaling" #> [119] "Regulation of toll-like receptor signaling pathway" #> [120] "Photodynamic therapy-induced NF-kB survival signaling" #> [121] "Photodynamic therapy-induced NF-kB survival signaling" #> [122] "Allograft Rejection" #> [123] "Matrix Metalloproteinases" #> [124] "Nanoparticle triggered regulated necrosis" #> [125] "Cardiac Hypertrophic Response" #> [126] "EV release from cardiac cells and their functional effects" #> [127] "Sudden Infant Death Syndrome (SIDS) Susceptibility Pathways" #> [128] "Selenium Micronutrient Network" #> [129] "Selenium Micronutrient Network" #> [130] "Vitamin B12 Metabolism" #> [131] "Vitamin B12 Metabolism" #> [132] "Folate Metabolism" #> [133] "Folate Metabolism" #> [134] "MAPK Signaling Pathway" #> [135] "Monoamine Transport" #> [136] "Aryl Hydrocarbon Receptor Netpath" #> [137] "Role of Altered Glycolysation of MUC1 in Tumour Microenvironment" #> [138] "Oligodendrocyte Specification and differentiation(including remyelination), leading to Myelin Components for CNS" #> [139] "Oligodendrocyte Specification and differentiation(including remyelination), leading to Myelin Components for CNS" #> [140] "Apoptosis-related network due to altered Notch3 in ovarian cancer" #> [141] "Vitamin D in inflammatory diseases" #> [142] "IL-18 signaling pathway" #> [143] "IL-18 signaling pathway" #> [144] "MicroRNAs in cardiomyocyte hypertrophy" #> [145] "Netrin-UNC5B signaling Pathway" #> [146] "TGF-beta Receptor Signaling" #> [147] "TGF-beta Receptor Signaling" #> [148] "Amyotrophic lateral sclerosis (ALS)" #> [149] "Amyotrophic lateral sclerosis (ALS)"