Retrieve list of pathway WPIDs containing the query Xref by identifier and system code.

findPathwayIdsByXref(identifier, systemCode)

Arguments

identifier

(character) The official ID specified by a data source or system

systemCode

(character) The BridgeDb code associated with the data source or system, e.g., En (Ensembl), L (Entrez), Ch (HMDB), etc. See column two of https://github.com/bridgedb/BridgeDb/blob/master/org.bridgedb.bio/src/main/resources/org/bridgedb/bio/datasources.tsv.

Value

A list of WPIDs

Details

Note: there will be multiple listings of the same pathway if the Xref is present mutiple times.

Examples

{ findPathwayIdsByXref('ENSG00000232810','En') }
#> [1] "WP2813" "WP4329" "WP4329" "WP2882" "WP4066" "WP4066" "WP3980" "WP3980" #> [9] "WP4063" "WP3599" "WP2873" "WP3893" "WP3893" "WP262" "WP4136" "WP3865" #> [17] "WP3941" "WP3624" "WP2431" "WP2431" "WP2431" "WP2431" "WP3863" "WP4673" #> [25] "WP3287" "WP4008" "WP4341" "WP4666" "WP4666" "WP2059" "WP2571" "WP1584" #> [33] "WP4298" "WP4481" "WP530" "WP530" "WP530" "WP530" "WP530" "WP530" #> [41] "WP530" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" #> [49] "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" #> [57] "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" #> [65] "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" #> [73] "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" "WP3380" #> [81] "WP2751" "WP4396" "WP4396" "WP4396" "WP4066" "WP4066" "WP3980" "WP3398" #> [89] "WP3398" "WP3398" "WP3398" "WP3398" "WP3398" "WP3398" "WP3398" "WP4496" #> [97] "WP3611" "WP3611" "WP3611" "WP4493" "WP4063" "WP4478" "WP231" "WP231" #> [105] "WP231" "WP231" "WP231" "WP231" "WP3851" "WP2036" "WP2036" "WP2036" #> [113] "WP75" "WP236" "WP254" "WP314" "WP560" "WP560" "WP1449" "WP3617" #> [121] "WP3617" "WP2328" "WP129" "WP2513" "WP2795" "WP3297" "WP706" "WP15" #> [129] "WP15" "WP1533" "WP1533" "WP176" "WP176" "WP382" "WP727" "WP2586" #> [137] "WP4480" "WP4304" "WP4304" "WP2864" "WP4482" "WP4754" "WP4754" "WP1544" #> [145] "WP4747" "WP4816" "WP4816" "WP2447" "WP2447"