hpaVisSubcell.Rd
Visualize the the confirmed subcellular locations of genes of interest.
hpaVisSubcell( data = NULL, targetGene = NULL, reliability = c("enhanced", "supported", "approved", "uncertain"), color = c("#ffffb2", "#e31a1c"), customTheme = FALSE )
data | Input the list object generated by |
---|---|
targetGene | Vector of strings of HGNC gene symbols. By default it is
set to |
reliability | Vector of string indicate which reliability scores you want to plot. The
default is everything |
color | Vector of 2 colors used to depict if the protein expresses in a location or not. |
customTheme | Logical argument. If |
This function will return a ggplot2 plot object, which can be further modified if desirable. The subcellular location data is visualized as a tile graph, in which the x axis includes the inquired proteins and the y axis contain the subcellular locations.
Other visualization functions:
hpaVisPatho()
,
hpaVisTissue()
,
hpaVis()
data("hpa_histology_data") geneList <- c('TP53', 'EGFR', 'CD44', 'PTEN', 'IDH1', 'IDH2', 'CYCS') ## A typical function call hpaVisSubcell(data=hpa_histology_data, targetGene=geneList)