DOI: 10.18129/B9.bioc.tidySingleCellExperiment    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see tidySingleCellExperiment.

Brings SingleCellExperiment to the Tidyverse

Bioconductor version: 3.12

tidySingleCellExperiment is an adapter that abstracts the 'SingleCellExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySingleCellExperiment")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Overview of the tidySingleCellExperiment package
PDF   Reference Manual


biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (0.5 years)
License GPL-3
Depends R (>= 4.0.0), SingleCellExperiment
Imports dplyr, tibble, tidyr, ggplot2, plotly, magrittr, rlang, purrr, lifecycle, methods, utils, S4Vectors, tidyselect, ellipsis, pillar, stringr, cli, fansi
Suggests BiocStyle, testthat, knitr, markdown, SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph, GGally, Matrix, uwot, celldex, dittoSeq
Depends On Me
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package tidySingleCellExperiment_1.0.0.tar.gz
Windows Binary tidySingleCellExperiment_1.0.0.zip
macOS 10.13 (High Sierra) tidySingleCellExperiment_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidySingleCellExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySingleCellExperiment
Package Short Url https://bioconductor.org/packages/tidySingleCellExperiment/
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