DOI: 10.18129/B9.bioc.switchde    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see switchde.

Switch-like differential expression across single-cell trajectories

Bioconductor version: 3.12

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

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biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.16.0
In Bioconductor since BioC 3.4 (R-3.3) (4.5 years)
License GPL (>= 2)
Depends R (>= 3.4), SingleCellExperiment
Imports SummarizedExperiment, dplyr, ggplot2, methods, stats
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
URL https://github.com/kieranrcampbell/switchde
BugReports https://github.com/kieranrcampbell/switchde
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Source Package switchde_1.16.0.tar.gz
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Source Repository git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde
Package Short Url https://bioconductor.org/packages/switchde/
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