sigaR

DOI: 10.18129/B9.bioc.sigaR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigaR.

Statistics for Integrative Genomics Analyses in R

Bioconductor version: 3.12

Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Version	1.38.0
In Bioconductor since	BioC 2.10 (R-2.15) (9 years)
License	GPL (>= 2)
Depends	Biobase, CGHbase, methods, mvtnorm
Imports	corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats
LinkingTo
Suggests	CGHcall
SystemRequirements
Enhances
URL	http://www.few.vu.nl/~wvanwie
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/sigaR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sigaR
Package Short Url	https://bioconductor.org/packages/sigaR/
Package Downloads Report	Download Stats