DOI: 10.18129/B9.bioc.sesame    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see sesame.

SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Bioconductor version: 3.12

Tools For analyzing Illumina Infinium DNA methylation arrays.SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features more accurate detection calling, intelligenet inference of ethnicity, sex and advanced quality control routines.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]

Maintainer: Wanding Zhou <zhouwanding at>

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HTML R Script 0. SeSAMe User Guide
HTML R Script 1. Quality Controls
HTML R Script 2. Large Data
HTML R Script 3. Minfi Interaction
HTML R Script 4. data sanitization
HTML R Script 5. Horvath Mammal40 Array
HTML R Script 6. Mouse Array
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software
Version 1.8.12
In Bioconductor since BioC 3.8 (R-3.5) (2.5 years)
License MIT + file LICENSE
Depends R (>= 4.0), sesameData, methods
Imports BiocParallel, grDevices, utils, stringr, tibble, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, S4Vectors, randomForest, wheatmap, ggplot2, parallel, matrixStats, DNAcopy, stats, SummarizedExperiment
Suggests scales, knitr, rmarkdown, testthat, dplyr, tidyr, BiocStyle, IlluminaHumanMethylation450kmanifest, minfi, FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k, HDF5Array
Depends On Me
Imports Me TCGAbiolinksGUI
Suggests Me sesameData, TCGAbiolinks
Links To Me
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