DOI: 10.18129/B9.bioc.scsR    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see scsR.

SiRNA correction for seed mediated off-target effect

Bioconductor version: 3.12

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at>, Roger Meier <roger.meier at>, Christian von Mering <mering at>

Citation (from within R, enter citation("scsR")):


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if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews Preprocessing, Software
Version 1.26.0
In Bioconductor since BioC 2.14 (R-3.1) (7 years)
License GPL-2
Depends R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests RUnit
Depends On Me
Imports Me
Suggests Me
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