DOI: 10.18129/B9.bioc.scRepertoire    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see scRepertoire.

A toolkit for single-cell immune receptor profiling

Bioconductor version: 3.12

scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages.

Author: Nick Borcherding [aut, cre]

Maintainer: Nick Borcherding <ncborch at>

Citation (from within R, enter citation("scRepertoire")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Annotation, Classification, ImmunoOncology, Sequencing, SingleCell, Software
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (0.5 years)
License Apache License 2.0
Depends dplyr, ggalluvial, ggplot2, reshape2, R (>= 4.0)
Imports Biostrings, RColorBrewer, colorRamps, ggdendro, ggfittext, stringr, vegan, powerTCR, SummarizedExperiment, SingleCellExperiment, Seurat
Suggests knitr, rmarkdown, BiocStyle, scater, circlize, scales
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package scRepertoire_1.0.0.tar.gz
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