rsemmed

DOI: 10.18129/B9.bioc.rsemmed    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see rsemmed.

An interface to the Semantic MEDLINE database

Bioconductor version: 3.12

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Author: Leslie Myint [aut, cre]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rsemmed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rsemmed")

 

HTML	R Script	rsemmed User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Pathways, Software, SystemsBiology
Version	1.0.0
In Bioconductor since	BioC 3.12 (R-4.0) (0.5 years)
License	Artistic-2.0
Depends	R (>= 4.0), igraph
Imports	methods, magrittr, stringr, dplyr
LinkingTo
Suggests	testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/lmyint/rsemmed
BugReports	https://github.com/lmyint/rsemmed/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rsemmed_1.0.0.tar.gz
Windows Binary	rsemmed_1.0.0.zip
macOS 10.13 (High Sierra)	rsemmed_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rsemmed
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rsemmed
Package Short Url	https://bioconductor.org/packages/rsemmed/
Package Downloads Report	Download Stats