DOI: 10.18129/B9.bioc.rrvgo    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see rrvgo.

Reduce + Visualize GO

Bioconductor version: 3.12

Reduce and visualize lists of Gene Ontology terms by identifying redudance based on semantic similarity.

Author: Sergi Sayols [aut, cre]

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>

Citation (from within R, enter citation("rrvgo")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews Annotation, Clustering, GO, Network, Pathways, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (1 year)
License GPL-3
Imports GOSemSim, AnnotationDbi, GO.db, pheatmap, ggplot2, ggrepel, treemap, tm, wordcloud, shiny, grDevices, grid, stats, methods
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), shinydashboard, DT, plotly, heatmaply, magrittr, utils, clusterProfiler, DOSE, slam, org.Ag.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db, org.Sc.sgd.db, org.Ss.eg.db, org.Xl.eg.db
URL https://www.bioconductor.org/packages/rrvgo https://ssayols.github.io/rrvgo/index.html
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Source Package rrvgo_1.2.0.tar.gz
Windows Binary rrvgo_1.2.0.zip
macOS 10.13 (High Sierra) rrvgo_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rrvgo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rrvgo
Package Short Url https://bioconductor.org/packages/rrvgo/
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