plrs

DOI: 10.18129/B9.bioc.plrs    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see plrs.

Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Bioconductor version: 3.12

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author: Gwenael G.R. Leday

Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plrs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Regression, Software
Version	1.30.0
In Bioconductor since	BioC 2.12 (R-3.0) (8 years)
License	GPL (>=2.0)
Depends	R (>= 2.10), Biobase
Imports	BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils
LinkingTo
Suggests	mvtnorm, methods
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/plrs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plrs
Package Short Url	https://bioconductor.org/packages/plrs/
Package Downloads Report	Download Stats