plgem

DOI: 10.18129/B9.bioc.plgem    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see plgem.

Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)

Bioconductor version: 3.12

The Power Law Global Error Model (PLGEM) has been shown to faithfully model the variance-versus-mean dependence that exists in a variety of genome-wide datasets, including microarray and proteomics data. The use of PLGEM has been shown to improve the detection of differentially expressed genes or proteins in these datasets.

Author: Mattia Pelizzola <mattia.pelizzola at gmail.com> and Norman Pavelka <normanpavelka at gmail.com>

Maintainer: Norman Pavelka <normanpavelka at gmail.com>

Citation (from within R, enter citation("plgem")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plgem")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plgem")

 

PDF R Script An introduction to PLGEM
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, MassSpectrometry, Microarray, Proteomics, Software
Version 1.62.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 16 years)
License GPL-2
Depends R (>= 2.10)
Imports utils, Biobase(>= 2.5.5), MASS, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.genopolis.it
Depends On Me
Imports Me INSPEcT
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plgem_1.62.0.tar.gz
Windows Binary plgem_1.62.0.zip
macOS 10.13 (High Sierra) plgem_1.62.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plgem
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plgem
Package Short Url https://bioconductor.org/packages/plgem/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: