DOI: 10.18129/B9.bioc.pathprint    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathprintGEOData.

Pathway fingerprinting for analysis of gene expression arrays

Bioconductor version: 3.12

Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at>

Citation (from within R, enter citation("pathprint")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews GeneExpression, KEGG, Reactome, Software, Transcription
Version 1.20.0
In Bioconductor since BioC 3.5 (R-3.4) (4 years)
License GPL
Depends R (>= 3.4)
Imports stats, utils
Suggests ALL, GEOquery, pathprintGEOData, SummarizedExperiment
Depends On Me
Imports Me
Suggests Me pathprintGEOData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: