DOI: 10.18129/B9.bioc.netbenchmark    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netbenchmark.

Benchmarking of several gene network inference methods

Bioconductor version: 3.12

This package implements a benchmarking of several gene network inference algorithms from gene expression data.

Author: Pau Bellot, Catharina Olsen, Patrick Meyer

Maintainer: Pau Bellot <pau.bellot at>

Citation (from within R, enter citation("netbenchmark")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews GeneExpression, GraphAndNetwork, Microarray, Network, NetworkInference, Software
Version 1.22.0
In Bioconductor since BioC 3.1 (R-3.2) (6 years)
License CC BY-NC-SA 4.0
Depends grndata(>= 0.99.3)
Imports Rcpp (>= 0.11.0), minet, GENIE3, c3net, PCIT, GeneNet, tools, pracma, Matrix, corpcor, fdrtool
LinkingTo Rcpp
Suggests RUnit, BiocGenerics, knitr, graph
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