metaMS

DOI: 10.18129/B9.bioc.metaMS    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see metaMS.

MS-based metabolomics annotation pipeline

Bioconductor version: 3.12

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut] (author of GC-MS part, Initial Maintainer), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline), Yann Guitton [ctb, cre] , Julien Saint-Vanne [ctb]

Maintainer: Yann Guitton <yann.guitton at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaMS")

 

PDF	R Script	runGC
PDF	R Script	runLC
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.26.0
In Bioconductor since	BioC 2.14 (R-3.1) (7 years)
License	GPL (>= 2)
Depends	R (>= 4.0), methods, CAMERA, xcms(>= 1.35)
Imports	Matrix, tools, robustbase, BiocGenerics, graphics, stats, utils
LinkingTo
Suggests	metaMSdata, RUnit
SystemRequirements
Enhances
URL	https://github.com/yguitton/metaMS
Depends On Me
Imports Me
Suggests Me	CluMSID
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metaMS_1.26.0.tar.gz
Windows Binary	metaMS_1.26.0.zip
macOS 10.13 (High Sierra)	metaMS_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metaMS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/metaMS
Package Short Url	https://bioconductor.org/packages/metaMS/
Package Downloads Report	Download Stats