made4

DOI: 10.18129/B9.bioc.made4    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see made4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: 3.12

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("made4")

 

HTML	R Script	Authoring R Markdown vignettes
PDF		Reference Manual

Details

biocViews	Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version	1.64.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 16 years)
License	Artistic-2.0
Depends	RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports	ade4
LinkingTo
Suggests	affy, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	http://www.hsph.harvard.edu/aedin-culhane/
Depends On Me
Imports Me	deco, omicade4
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	made4_1.64.0.tar.gz
Windows Binary	made4_1.64.0.zip
macOS 10.13 (High Sierra)	made4_1.64.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/made4
Package Short Url	https://bioconductor.org/packages/made4/
Package Downloads Report	Download Stats