DOI: 10.18129/B9.bioc.iCOBRA    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.12

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Classification, Software
Version 1.18.1
In Bioconductor since BioC 3.3 (R-3.3) (5 years)
License GPL (>=2)
Depends R (>= 3.4)
Imports shiny (>=, shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR
Suggests knitr, testthat, rmarkdown
URL https://github.com/markrobinsonuzh/iCOBRA
BugReports https://github.com/markrobinsonuzh/iCOBRA/issues
Depends On Me
Imports Me
Suggests Me muscat, SummarizedBenchmark
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.18.1.tar.gz
Windows Binary iCOBRA_1.18.1.zip
macOS 10.13 (High Sierra) iCOBRA_1.18.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Package Short Url https://bioconductor.org/packages/iCOBRA/
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