DOI: 10.18129/B9.bioc.escape    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see escape.

Easy single cell analysis platform for enrichment

Bioconductor version: 3.12

A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize GSEA across individual cells.

Author: Nick Borcherding [aut, cre], Jared Andrews [aut]

Maintainer: Nick Borcherding <ncborch at>

Citation (from within R, enter citation("escape")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews Annotation, Classification, GeneSetEnrichment, GeneSignaling, Pathways, Sequencing, SingleCell, Software
Version 1.0.1
In Bioconductor since BioC 3.12 (R-4.0) (0.5 years)
License Apache License 2.0
Depends R (>= 4.0)
Imports grDevices, dplyr, ggplot2, GSEABase, GSVA, SingleCellExperiment, limma, ggridges, msigdbr, stats, BiocParallel, Matrix
Suggests Seurat, SeuratObject, knitr, rmarkdown, BiocStyle, testthat, dittoSeq(>= 1.1.2)
Depends On Me
Imports Me
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Source Package escape_1.0.1.tar.gz
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