DOI: 10.18129/B9.bioc.dpeak    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see dpeak.

dPeak (Deconvolution of Peaks in ChIP-seq Analysis)

Bioconductor version: 3.12

dPeak is a statistical framework for the high resolution identification of protein-DNA interaction sites using PET and SET ChIP-Seq and ChIP-exo data. It provides computationally efficient and user friendly interface to process ChIP-seq and ChIP-exo data, implement exploratory analysis, fit dPeak model, and export list of predicted binding sites for downstream analysis.

Author: Dongjun Chung, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("dpeak")):


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PDF R Script dPeak
PDF   Reference Manual
Text   NEWS


biocViews ChIPSeq, Genetics, Sequencing, Software, Transcription
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (1 year)
License GPL (>= 2)
Depends R (>= 4.0.0), methods, stats, utils, graphics, Rcpp
Imports MASS, IRanges, BSgenome, grDevices, parallel
LinkingTo Rcpp
Suggests BSgenome.Ecoli.NCBI.20080805
SystemRequirements GNU make, meme, fimo
BugReports https://github.com/dongjunchung/dpeak/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package dpeak_1.2.0.tar.gz
Windows Binary dpeak_1.2.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) dpeak_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/dpeak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/dpeak
Package Short Url https://bioconductor.org/packages/dpeak/
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