This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see cytofast.
Bioconductor version: 3.12
Multi-parametric flow and mass cytometry allows exceptional high-resolution exploration of the cellular composition of the immune system. Together with tools like FlowSOM and Cytosplore it is possible to identify novel cell types. By introducing cytofast we hope to offer a workflow for visualization and quantification of cell clusters for an efficient discovery of cell populations associated with diseases or other clinical outcomes.
Author: K.A. Stam [aut, cre], G. Beyrend [aut]
Maintainer: K.A. Stam <k.a.stam at hotmail.com>
Citation (from within R,
enter citation("cytofast")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("cytofast")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cytofast")
HTML | R Script | Spitzer |
Reference Manual | ||
Text | NEWS |
biocViews | Clustering, FlowCytometry, Software, Visualization |
Version | 1.6.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (2 years) |
License | GPL-3 |
Depends | R (>= 3.6.0) |
Imports | flowCore, ggplot2, ggridges, RColorBrewer, reshape2, stats, grDevices, Rdpack, methods, grid, FlowSOM |
LinkingTo | |
Suggests | BiocStyle, knitr, rmarkdown |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | cytofast_1.6.0.tar.gz |
Windows Binary | cytofast_1.6.0.zip |
macOS 10.13 (High Sierra) | cytofast_1.6.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/cytofast |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cytofast |
Package Short Url | https://bioconductor.org/packages/cytofast/ |
Package Downloads Report | Download Stats |
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