apComplex

DOI: 10.18129/B9.bioc.apComplex    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see apComplex.

Estimate protein complex membership using AP-MS protein data

Bioconductor version: 3.12

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Citation (from within R, enter citation("apComplex")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")

 

PDF R Script apComplex
PDF   Reference Manual

Details

biocViews GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version 2.56.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 16 years)
License LGPL
Depends R (>= 2.10), graph, RBGL
Imports Rgraphviz, stats, org.Sc.sgd.db
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me ScISI
Imports Me
Suggests Me BiocCaseStudies
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package apComplex_2.56.0.tar.gz
Windows Binary apComplex_2.56.0.zip
macOS 10.13 (High Sierra) apComplex_2.56.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apComplex
Package Short Url https://bioconductor.org/packages/apComplex/
Package Downloads Report Download Stats

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