alevinQC

DOI: 10.18129/B9.bioc.alevinQC    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see alevinQC.

Generate QC Reports For Alevin Output

Bioconductor version: 3.12

Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alevinQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alevinQC")

 

HTML	R Script	alevinQC
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	QualityControl, SingleCell, Software
Version	1.6.1
In Bioconductor since	BioC 3.9 (R-3.6) (2 years)
License	MIT + file LICENSE
Depends	R (>= 4.0)
Imports	rmarkdown (>= 2.5), tools, methods, ggplot2, GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang
LinkingTo
Suggests	knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL	https://github.com/csoneson/alevinQC
BugReports	https://github.com/csoneson/alevinQC/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alevinQC_1.6.1.tar.gz
Windows Binary	alevinQC_1.6.1.zip
macOS 10.13 (High Sierra)	alevinQC_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alevinQC
Package Short Url	https://bioconductor.org/packages/alevinQC/
Package Downloads Report	Download Stats