SPLINTER

DOI: 10.18129/B9.bioc.SPLINTER    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see SPLINTER.

Splice Interpreter of Transcripts

Bioconductor version: 3.12

Provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Author: Diana Low [aut, cre]

Maintainer: Diana Low <lowdiana at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SPLINTER")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SPLINTER")

 

PDF	R Script	SPLINTER
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization
Version	1.16.0
In Bioconductor since	BioC 3.4 (R-3.3) (4.5 years)
License	GPL-2
Depends	R (>= 3.6.0), grDevices, stats
Imports	graphics, ggplot2, seqLogo, Biostrings, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, stringr, methods, BSgenome.Mmusculus.UCSC.mm9, googleVis
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/dianalow/SPLINTER/
BugReports	https://github.com/dianalow/SPLINTER/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SPLINTER_1.16.0.tar.gz
Windows Binary	SPLINTER_1.16.0.zip
macOS 10.13 (High Sierra)	SPLINTER_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SPLINTER
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SPLINTER
Package Short Url	https://bioconductor.org/packages/SPLINTER/
Package Downloads Report	Download Stats