This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see Rbowtie2.
Bioconductor version: 3.12
This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.
Author: Zheng Wei, Wei Zhang
Maintainer: Zheng Wei <wzweizheng at qq.com>
Citation (from within R,
enter citation("Rbowtie2")
):
To install this package, start R (version "4.0") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("Rbowtie2")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbowtie2")
HTML | R Script | An Introduction to Rbowtie2 |
Reference Manual | ||
Text | NEWS |
biocViews | Alignment, Preprocessing, Sequencing, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (3.5 years) |
License | GPL (>= 3) |
Depends | R (>= 3.5) |
Imports | |
LinkingTo | |
Suggests | knitr |
SystemRequirements | C++11 |
Enhances | |
URL | |
Depends On Me | |
Imports Me | esATAC, UMI4Cats |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | Rbowtie2_1.12.0.tar.gz |
Windows Binary | Rbowtie2_1.12.0.zip (64-bit only) |
macOS 10.13 (High Sierra) | Rbowtie2_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rbowtie2 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rbowtie2 |
Package Short Url | https://bioconductor.org/packages/Rbowtie2/ |
Package Downloads Report | Download Stats |
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