DOI: 10.18129/B9.bioc.PrecisionTrialDrawer    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see PrecisionTrialDrawer.

A Tool to Analyze and Design NGS Based Custom Gene Panels

Bioconductor version: 3.12

A suite of methods to design umbrella and basket trials for precision oncology.

Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at>

Citation (from within R, enter citation("PrecisionTrialDrawer")):


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biocViews DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version 1.6.0
In Bioconductor since BioC 3.9 (R-3.6) (2 years)
License GPL-3
Depends R (>= 3.6)
Imports graphics, grDevices, stats, utils, methods, cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
Suggests BiocStyle, knitr, rmarkdown, dplyr
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Source Package PrecisionTrialDrawer_1.6.0.tar.gz
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