DOI: 10.18129/B9.bioc.PharmacoGx    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see PharmacoGx.

Analysis of Large-Scale Pharmacogenomic Data

Bioconductor version: 3.12

Contains a set of functions to perform large-scale analysis of pharmaco-genomic data. These include the PharmacoSet object for storing the results of pharmacogenomic experiments, as well as a number of functions for computing common summaries of drug-dose response and correlating them with the molecular features in a cancer cell-line.

Author: Petr Smirnov [aut], Zhaleh Safikhani [aut], Christopher Eeles [aut], Mark Freeman [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at>

Citation (from within R, enter citation("PharmacoGx")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Creating a PharmacoSet Object
PDF R Script PharmacoGx: An R Package for Analysis of Large Pharmacogenomic Datasets
PDF   Reference Manual
Text   NEWS


biocViews Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Version 2.2.4
In Bioconductor since BioC 3.4 (R-3.3) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6), CoreGx
Imports Biobase, S4Vectors, SummarizedExperiment, BiocParallel, ggplot2, magicaxis, RColorBrewer, parallel, caTools, methods, downloader, stats, utils, graphics, grDevices, reshape2, jsonlite, data.table
Suggests pander, rmarkdown, knitr, knitcitations, crayon, testthat, BiocGenerics
Depends On Me
Imports Me Xeva
Suggests Me ToxicoGx
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PharmacoGx_2.2.4.tar.gz
Windows Binary
macOS 10.13 (High Sierra) PharmacoGx_2.2.4.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: