OmicsLonDA

DOI: 10.18129/B9.bioc.OmicsLonDA    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see OmicsLonDA.

Omics Longitudinal Differential Analysis

Bioconductor version: 3.12

Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups.

Author: Ahmed A. Metwally, Tom Zhang, Michael Snyder

Maintainer: Ahmed A. Metwally <ametwall at stanford.edu>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmicsLonDA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmicsLonDA")

 

HTML	R Script	OmicsLonDA Package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Lipidomics, Metabolomics, Microbiome, Proteomics, Regression, Software, Survival, TimeCourse, Transcriptomics
Version	1.6.0
In Bioconductor since	BioC 3.9 (R-3.6) (2 years)
License	MIT + file LICENSE
Depends	R (>= 3.6)
Imports	SummarizedExperiment, gss, plyr, zoo, pracma, ggplot2, BiocParallel, parallel, grDevices, graphics, stats, utils, methods, BiocGenerics
LinkingTo
Suggests	knitr, rmarkdown, testthat, devtools, BiocManager
SystemRequirements
Enhances
URL	https://github.com/aametwally/OmicsLonDA
BugReports	https://github.com/aametwally/OmicsLonDA/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OmicsLonDA_1.6.0.tar.gz
Windows Binary	OmicsLonDA_1.6.0.zip
macOS 10.13 (High Sierra)	OmicsLonDA_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OmicsLonDA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OmicsLonDA
Package Short Url	https://bioconductor.org/packages/OmicsLonDA/
Package Downloads Report	Download Stats