DOI: 10.18129/B9.bioc.NetSAM    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see NetSAM.

Network Seriation And Modularization

Bioconductor version: 3.12

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt ( or other network analysis.

Author: Jing Wang < at>

Maintainer: Bing Zhang <bing.zhang at>

Citation (from within R, enter citation("NetSAM")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script NetSAM
PDF   Reference Manual


biocViews Network, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 2.13 (R-3.0) (7.5 years)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
Suggests RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NetSAM_1.30.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) NetSAM_1.30.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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