MPFE

DOI: 10.18129/B9.bioc.MPFE    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MPFE.

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Bioconductor version: 3.12

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("MPFE")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MPFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

 

PDF R Script MPFE
PDF   Reference Manual
Text   README

Details

biocViews DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version 1.26.0
In Bioconductor since BioC 3.0 (R-3.1) (6.5 years)
License GPL (>= 3)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MPFE_1.26.0.tar.gz
Windows Binary MPFE_1.26.0.zip
macOS 10.13 (High Sierra) MPFE_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MPFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MPFE
Package Short Url https://bioconductor.org/packages/MPFE/
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