MEAT

DOI: 10.18129/B9.bioc.MEAT    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see MEAT.

Muscle Epigenetic Age Test

Bioconductor version: 3.12

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Author: Sarah Voisin [aut, cre] , Steve Horvath [ctb]

Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MEAT")

 

HTML	R Script	MEAT
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software
Version	1.2.2
In Bioconductor since	BioC 3.11 (R-4.0) (1 year)
License	MIT + file LICENSE
Depends	R (>= 4.0)
Imports	impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL	https://github.com/sarah-voisin/MEAT
BugReports	https://github.com/sarah-voisin/MEAT/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MEAT_1.2.2.tar.gz
Windows Binary	MEAT_1.2.2.zip
macOS 10.13 (High Sierra)	MEAT_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MEAT
Package Short Url	https://bioconductor.org/packages/MEAT/
Package Downloads Report	Download Stats