DEGseq

DOI: 10.18129/B9.bioc.DEGseq    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: 3.12

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")

 

PDF	R Script	DEGseq
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version	1.44.0
In Bioconductor since	BioC 2.5 (R-2.10) (11.5 years)
License	LGPL (>=2)
Depends	R (>= 2.8.0), qvalue, methods
Imports	graphics, grDevices, methods, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEGseq_1.44.0.tar.gz
Windows Binary	DEGseq_1.44.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	DEGseq_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEGseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEGseq
Package Short Url	https://bioconductor.org/packages/DEGseq/
Package Downloads Report	Download Stats