ConsensusClusterPlus

DOI: 10.18129/B9.bioc.ConsensusClusterPlus    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ConsensusClusterPlus.

ConsensusClusterPlus

Bioconductor version: 3.12

algorithm for determining cluster count and membership by stability evidence in unsupervised analysis

Author: Matt Wilkerson <mdwilkerson at outlook.com>, Peter Waltman <waltman at soe.ucsc.edu>

Maintainer: Matt Wilkerson <mdwilkerson at outlook.com>

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ConsensusClusterPlus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ConsensusClusterPlus")

 

PDF	R Script	ConsensusClusterPlus Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Software
Version	1.54.0
In Bioconductor since	BioC 2.6 (R-2.11) (11 years)
License	GPL version 2
Depends
Imports	Biobase, ALL, graphics, stats, utils, cluster
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	CancerSubtypes, CATALYST, ChromSCape, CrossICC, DEGreport, DeSousa2013, FlowSOM
Suggests Me	TCGAbiolinks
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ConsensusClusterPlus_1.54.0.tar.gz
Windows Binary	ConsensusClusterPlus_1.54.0.zip
macOS 10.13 (High Sierra)	ConsensusClusterPlus_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ConsensusClusterPlus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ConsensusClusterPlus
Package Short Url	https://bioconductor.org/packages/ConsensusClusterPlus/
Package Downloads Report	Download Stats