DOI: 10.18129/B9.bioc.CSSQ    

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see CSSQ.

Chip-seq Signal Quantifier Pipeline

Bioconductor version: 3.12

This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.

Author: Ashwath Kumar [aut], Yajun Mei [aut], Yuhong Fan [aut]

Maintainer: Fan Lab at Georgia Institute of Technology <yuhong.fan at biology.gatech.edu>

Citation (from within R, enter citation("CSSQ")):


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if (!requireNamespace("BiocManager", quietly = TRUE))


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HTML R Script Introduction to CSSQ
PDF   Reference Manual


biocViews ChIPSeq, DifferentialPeakCalling, Normalization, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (1 year)
License Artistic-2.0
Depends SummarizedExperiment, GenomicRanges, IRanges, S4Vectors, rtracklayer
Imports GenomicAlignments, GenomicFeatures, Rsamtools, ggplot2, grDevices, stats, utils
Suggests BiocStyle, knitr, rmarkdown
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package CSSQ_1.2.0.tar.gz
Windows Binary CSSQ_1.2.0.zip
macOS 10.13 (High Sierra) CSSQ_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CSSQ
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CSSQ
Package Short Url https://bioconductor.org/packages/CSSQ/
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