DOI: 10.18129/B9.bioc.CHARGE    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CHARGE.

CHARGE: CHromosome Assessment in R from Gene Expression data

Bioconductor version: 3.12

Identifies genomic duplications or deletions from gene expression data.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at>

Citation (from within R, enter citation("CHARGE")):


To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Clustering, GeneExpression, Software
Version 1.10.0
In Bioconductor since BioC 3.7 (R-3.5) (3 years)
License GPL-2
Depends R (>= 3.5), GenomicRanges, methods
Imports SummarizedExperiment, FactoMineR, factoextra, IRanges, graphics, modes, parallel, plyr, cluster, diptest, stats, matrixStats
Suggests roxygen2, EnsDb.Hsapiens.v86
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