Analyzing tRNA sequences and structures


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Documentation for package ‘tRNA’ version 1.8.0

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gettRNABasePairing Accessing Dot Bracket annotation of tRNAs
gettRNABasePairing-method Accessing Dot Bracket annotation of tRNAs
gettRNAFeaturePlots Graphical summary of tRNA features
gettRNAFeaturePlots-method Graphical summary of tRNA features
gettRNALoopIDs Accessing Dot Bracket annotation of tRNAs
gettRNALoopIDs-method Accessing Dot Bracket annotation of tRNAs
gettRNAstructureGRanges tRNA structures and sequences
gettRNAstructureGRanges-method tRNA structures and sequences
gettRNAstructureSeqs tRNA structures and sequences
gettRNAstructureSeqs-method tRNA structures and sequences
gettRNASummary Summary of tRNA features
gettRNASummary-method Summary of tRNA features
gr tRNA example data
gr_eco tRNA example data
gr_human tRNA example data
gr_human2 tRNA example data
hasAcceptorStem Subsetting tRNAs
hasAcceptorStem-method Subsetting tRNAs
hasAnticodonLoop Subsetting tRNAs
hasAnticodonLoop-method Subsetting tRNAs
hasAnticodonStem Subsetting tRNAs
hasAnticodonStem-method Subsetting tRNAs
hasDloop Subsetting tRNAs
hasDloop-method Subsetting tRNAs
hasDStem Subsetting tRNAs
hasDStem-method Subsetting tRNAs
hasTloop Subsetting tRNAs
hasTloop-method Subsetting tRNAs
hasTStem Subsetting tRNAs
hasTStem-method Subsetting tRNAs
hasVariableLoop Subsetting tRNAs
hasVariableLoop-method Subsetting tRNAs
istRNAGRanges tRNA compatibility check
istRNAGRanges-method tRNA compatibility check
tRNA tRNA: analyzing tRNA sequences and structures
tRNA-data tRNA example data
tRNA-subset Subsetting tRNAs