Science-wise false discovery rate and proportion of true null hypotheses estimation

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Documentation for package ‘swfdr’ version 1.16.0

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BMI_GIANT_GWAS_sample Subset of SNPs from meta-analysis of BMI GWAS study.
calculateSwfdr Calculate the science-wise FDR (swfdr)
get_number_decimals Get number of decimals (i.e. return total number of digits after decimal point) for any vector of numbers in [0,1) if number of decimals <= 6
journals_pVals P-values from abstracts from articles in 5 biomedical journals (American Journal of Epidemiology, BMJ, JAMA, Lancet, New England Journal of Medicine), over 11 years (2000-2010).
lm_pi0 Estimation of pi0, proportion of p-values consistent with a null hypothesis
lm_qvalue Compute qvalues taking into account a matrix of covariates