Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

Documentation for package ‘scp’ version 1.0.0

aggregateFeaturesOverAssays	Aggregate features over multiple assays
computeFDR	Compute FDR from posterior error probabilities PEP
computeMedianCV	Compute the median coefficient of variation (CV) per cell
computeSCR	Compute the sample over carrier ratio (SCR)
divideByReference	Divide assay columns by a reference column
mqScpData	Example MaxQuant/SCoPE2 output
readSCP	Read single-cell proteomics data as a QFeatures object from tabular data and metadata
readSingleCellExperiment	Read SingleCellExperiment from tabular data
rowDataToDF	Extract the 'rowData' of a 'QFeatures' object to a 'DataFrame'
sampleAnnotation	Single cell sample annotation
scp1	Single Cell QFeatures data
transferColDataToAssay	Transfer the 'colData' to an Assay