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| DataGeNET.Psy-class | Class DataGeNET.Psy |
| DataGeNET.Psy-plot | Plots the content of a 'DataGeNET.Psy' object |
| enrichedPD | Enrichment of a user's input (genes) in PsyGeNET's diseases. |
| extract | Raw data from 'DataGeNET.Psy' and 'JaccardIndexPsy'. |
| extract-method | Raw data from 'DataGeNET.Psy' and 'JaccardIndexPsy'. |
| extractSentences | Method to obtain the sentences that support a gene-disease association from a 'DataGeNET.Psy' object. |
| extractSentences-method | Method to obtain the sentences that support a gene-disease association from a 'DataGeNET.Psy' object. |
| geneAttrPlot | Ploting the relation between genes and disease-categories |
| getUMLs | Query PsyGeNET for given gene(s) and generates an 'DataGeNET.Psy' |
| jaccardEstimation | Calculation of the Jaccard Index between ideseases |
| JaccardIndexPsy-class | Class JaccardIndexPsy |
| JaccardIndexPsy-plot | Plot the content of a 'JaccardIndexPsy' object. |
| ndisease | Getter from 'DataGeNET.Psy'. |
| ndisease-method | Getter from 'DataGeNET.Psy'. |
| ngene | Getter from 'DataGeNET.Psy'. |
| ngene-method | Getter from 'DataGeNET.Psy'. |
| pantherGraphic | Query PsyGeNET for given genes and creates a representation in base of their panther-class |
| plot-method | Plots the content of a 'DataGeNET.Psy' object |
| plot-method | Plot the content of a 'JaccardIndexPsy' object. |
| psygenet2r | psygenet2r: Package to query PsyGeNET database and to perform comorbidity studies |
| psygenetDisease | Query PsyGeNET for given disease(s) and generates an 'DataGeNET.Psy' |
| psygenetDiseaseSentences | Query PsyGeNET for given disease(s) and extract the pmids sentences that report a gene-disease asssociation. |
| psygenetGene | Query PsyGeNET for given gene(s) and generates an 'DataGeNET.Psy' |
| psygenetGeneSentences | Query PsyGeNET for given gene(s) and extract the pmids sentences that report a gene-disease asssociation. |
| qr | 'DataGeNET.Psy' obtained from quering PsyGeNET for gene '4852'. |
| topAnatEnrichment | Enrichment of a user's input (genes) in anatomical terms (TopAnat). |
| universe | Vector with gene universe for Jaccard Index |