ce11_all_REs | ce11_all_REs |
ce11_ATACseq | ce11_ATACseq |
ce11_proms | ce11_proms |
ce11_proms_seqs | ce11_proms_seqs |
ce11_TSSs | ce11_TSSs |
ce11_WW_10bp | ce11_WW_10bp |
getPeriodicity | A function to compute k-mer periodicity in sequence(s). |
getPeriodicity.DNAString | A function to compute k-mer periodicity in sequence(s). |
getPeriodicity.DNAStringSet | A function to compute k-mer periodicity in sequence(s). |
getPeriodicity.GRanges | A function to compute k-mer periodicity in sequence(s). |
getPeriodicityTrack | Function to generate a k-mer periodicity track |
getPeriodicityWithIterations | A function to compute PSDs with iterations |
getPeriodicityWithIterations.DNAStringSet | A function to compute PSDs with iterations |
getPeriodicityWithIterations.GRanges | A function to compute PSDs with iterations |
plotAggregateCoverage | A function to plot aggregated signals over sets of GRanges |
plotAggregateCoverage.CompressedRleList | A function to plot aggregated signals over sets of GRanges |
plotAggregateCoverage.list | A function to plot aggregated signals over sets of GRanges |
plotAggregateCoverage.SimpleRleList | A function to plot aggregated signals over sets of GRanges |
plotPeriodicityResults | Plot the output of getPeriodicity() |
setUpBPPARAM | setUpBPPARAM |
theme_ggplot2 | Personal ggplot2 theming function, adapted from roboto-condensed at https://github.com/hrbrmstr/hrbrthemes/ |