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| ce11_all_REs | ce11_all_REs |
| ce11_ATACseq | ce11_ATACseq |
| ce11_proms | ce11_proms |
| ce11_proms_seqs | ce11_proms_seqs |
| ce11_TSSs | ce11_TSSs |
| ce11_WW_10bp | ce11_WW_10bp |
| getPeriodicity | A function to compute k-mer periodicity in sequence(s). |
| getPeriodicity.DNAString | A function to compute k-mer periodicity in sequence(s). |
| getPeriodicity.DNAStringSet | A function to compute k-mer periodicity in sequence(s). |
| getPeriodicity.GRanges | A function to compute k-mer periodicity in sequence(s). |
| getPeriodicityTrack | Function to generate a k-mer periodicity track |
| getPeriodicityWithIterations | A function to compute PSDs with iterations |
| getPeriodicityWithIterations.DNAStringSet | A function to compute PSDs with iterations |
| getPeriodicityWithIterations.GRanges | A function to compute PSDs with iterations |
| plotAggregateCoverage | A function to plot aggregated signals over sets of GRanges |
| plotAggregateCoverage.CompressedRleList | A function to plot aggregated signals over sets of GRanges |
| plotAggregateCoverage.list | A function to plot aggregated signals over sets of GRanges |
| plotAggregateCoverage.SimpleRleList | A function to plot aggregated signals over sets of GRanges |
| plotPeriodicityResults | Plot the output of getPeriodicity() |
| setUpBPPARAM | setUpBPPARAM |
| theme_ggplot2 | Personal ggplot2 theming function, adapted from roboto-condensed at https://github.com/hrbrmstr/hrbrthemes/ |