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| computeStructuralMetrics | Metrics for the assessment of post-imputation structural preservation |
| CPD | CPD |
| findVariableFeatures | Find highly variable peptides |
| KNC | k-nearest class means (KNC) |
| KNN | k-nearest neighbour (KNN) |
| msImpute | Imputation of peptide log-intensity in mass spectrometry label-free proteomics by low-rank approximation |
| plotCV2 | Plot mean-CV^2 trend |
| pxd007959 | Processed peptide intensity matrix and experimental design table from PXD007959 study |
| pxd010943 | SWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils |
| pxd014777 | Processed peptide intensity matrix from PXD014777 study |
| scaleData | Standardize a matrix to have optionally row means zero and variances one, and/or column means zero and variances one. |
| selectFeatures | Select features for MAR/MNAR pattern examination |