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| .extract_raw_data | Extract raw data |
| .find_dmrs | Finding differentially methylated regions |
| .initializeMLEs | .initializeMLEs |
| .initialize_theta | .initialize_theta |
| .methylcc_engine | .methylcc_engine |
| .methylcc_estep | Expectation step |
| .methylcc_mstep | Maximization step |
| .pick_target_positions | Pick target positions |
| .preprocess_estimatecc | .preprocess_estimatecc |
| .splitit | .splitit |
| .WFun | Helper function to take the product of Z and cell composition estimates |
| cell_counts | Generic function that returns the cell composition estimates |
| cell_counts-method | Generic function that returns the cell composition estimates |
| estimatecc | Estimate cell composition from DNAm data |
| estimatecc-class | the estimatecc class |
| FlowSorted.Blood.450k.sub | A reduced size of the FlowSorted.Blood.450k dataset |
| offMethRegions | Unmethylated regions for all celltypes |
| onMethRegions | Methylated regions for all celltypes |