A SummarizedExperiment for Ivy-GAP data

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Documentation for package ‘ivygapSE’ version 1.12.0

Help Pages

designOverview render design overview
exprByType simple plot of expression values by structure/expression-based selection in IvyGAP
getRefLimma provide access to a limma analysis of RNA-seq profiles for reference histology samples
ivyGlimpse simple app to explore image property quantifications in relation to survival and expression
ivySE ivySE: SummarizedExperiment for IvyGAP expression data and metadata
makeGeneSets demonstration of gene set construction for ivyGlimpse app
nomenclat render design overview
subBlockDetails helper functions for data access
tumorDetails helper functions for data access
vocab helper functions for data access